BIOTIA‑DX: clinical accuracy for pathogen research

The ultimate software suite for pathogen detection, genomic analysis, and microbial surveillance. Powered by the GeoSeeq platform.

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No More False Positives

Clinical-grade tools for pathogen and metagenomic research

97%

sensitivity

99%

specificity

We have optimized BIOTIA-DX in clinical assays for varied specimen types. Paired with our optimized lab workflows we have attained lower limits of detection than culture with high sensitivity and specificity.

Why BIOTIA‑DX?

BIOTIA-DX is optimized for ease of use and high clinical accuracy, minimizing false positives so researchers can quickly extract meaningful insights.

High clinical accuracy with validated pipelines for pathogen detection and AMR profiling

AI-based metagenomic software to detect viruses, bacteria, fungi, protozoa, and AMR

Compatible with Illumina and Oxford Nanopore for metagenomics, whole genomes, and targeted NGS

Automated pipelines for pathogen analysis, metagenomics, and outbreak detection

Integrates with GeoSeeq for cloud storage, metadata tracking, and interactive analysis

GeoSeeq: The Backbone of BIOTIA-DX

GeoSeeq is a cloud-based platform for storing, analyzing, and visualizing large-scale biological and geospatial data. It provides secure storage, metadata tracking, and built-in bioinformatics tools, enabling seamless collaboration and automated genomic analysis.

  • Secure, Scalable Cloud Storage – Store large genomic datasets with version control & metadata tracking
  • Geospatial  Mapping – Overlay climate, outbreak, and sequencing data to track pathogen spread.
  • Effortless File Management – Upload, preview, and analyze bioinformatics files without complicated setups.
  • Built-in Data Science Tools – Perform PCA, UMAP, SQL queries, and machine learning workflows seamlessly.
  • Command Line & API Access – Integrate BIOTIA-DX with your existing research pipelines.

The Pipelines

BIOTIA-DX pipelines process sequencing data to identify pathogens, detect genetic variants, and assess antimicrobial resistance. Each pipeline provides detailed outputs like assembled genomes, lineage identification, and resistance gene detection. Users receive comprehensive reports with actionable insights for pathogen research.

Metagenomics
Influenza
Isolate
Outbreak
Tuberculosis

BIOTIA-DX Metagenomics

Clinical Grade Metagenomics

With 97% sensitivity and 99% specificity in urine samples, BIOTIA-DX Metagenome delivers precise and comprehensive results. BIOTIA-DX Metagenome is used in Biotia's clinically validated workflows providing reliable insights to support the diagnosis and management of both routine and complex urinary tract infection cases.

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Key Features

  • Species identification with clinical-grade accuracy
  • Identify antimicrobial resistance genes and mutations
  • Comprehensive data report with visualizations
  • Works with NGS and ONT
  • Works with DNA and RNA (Metatranscriptomic) data

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Specialized pipelines available for certain sample types: Wastewater, Urine, Cerebrospinal Fluid, Synovial Fluid, and16S/Amplicon samples

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This software is for research use only unless used as part of the BIOTIA-ID Urine Clinical Assay
View a Sample Project

BIOTIA-DX Influenza

Analyze Influenza - Beta Release

BIOTIA-DX Influenza is a cutting-edge bioinformatic tool designed to analyze influenza virus genomes using next-generation sequencing data. It performs H and N typing, subtypes highly pathogenic avian influenza variants, and identifies key genetic traits linked to virulence and transmissibility.

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This tool helps researchers efficiently process and interpret AIV genomic data, enabling them to track emerging variants and understand their epidemiological impact. BIOTIA-DX Influenza delivers actionable insights to support surveillance and public health responses to avian influenza outbreaks.

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Key Features

  • Determine segment types, clades, and H5 subclades
  • Identify cleavage sites and mutations
  • Comprehensive data report with visualizations
  • Works with NGS, ONT, and Sanger sequencing
  • Identifies Influenza A/B

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Similar tools available for other organisms, including West Nile virus and Dengue viruses

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For research use only
View a Sample Project

BIOTIA-DX Isolate

Analyze Microbial Isolates - Beta Release

BIOTIA-DX Isolate brings best in class genomic analysis to pathogen isolate sequencing. Remove any ambiguity about your isolated cultures with deep taxonomic characterization and genomic resistance analysis. Identify precise strain types for different species and, with BIOTIA-DX Outbreak, find outbreak clusters.

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Key Features

  • Determine species and strain from a database of thousands of organisms
  • Tag samples with LPSN taxonomy
  • Assemble and annotate genome for downstream analysis
  • Determine strain through custom cgMLST
  • Identify genomic drug resistance and virulence factors
  • Characterize plasmids such as those that carry mecA
  • Disambiguate tricky species groups like Ecoli Shigella and Klebsiella
  • Works with BIOTIA-DX Outbreak for outbreak cluster analysis
  • Validated on Illumina and ONT data

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Specialized tools available for certain pathogens, including: Tuberculosis, Acinetobacter

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For research use only
Contact us to learn more

BIOTIA-DX Outbreak

Track Outbreaks - Beta Release

BIOTIA-DX Outbreak provides critical information to infection control teams. Find clusters of closely related pathogens and identify sources of transmission. Track changing drug resistance patterns over time. Compare your facilities samples to publicly available outbreak genomes to identify community acquired vs facility acquired outbreaks.

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Key Features

  • Use custom cgMLSTs to determine deep genomic relatedness
  • Create relatedness trees using MST or evolutionarily guided algorithms
  • Compare to publicly available outbreak genomes
  • Track increasing resistance patterns
  • Grow trees as more samples are added
  • Find and track transmissions of virulent plasmids
  • GeoSeeq data engine provides powerful tools to identify transmission sources

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For research use only
Contact us to learn more

BIOTIA-DX Tuberculosis

High Resolution Analytics

With comprehensive resistance profiling and global strain comparison, BIOTIA-DX Tuberculosis provides high-resolution insights into Mycobacterium infections. BIOTIA-DX TB can support drug choice decisions, and outbreak investigation for tuberculosis and other mycobacterial diseases.


Key Features

• Species identification across Mycobacterium genus

• Drug resistance profiling for all WHO-listed TB treatments

• Detects AMR from both known mutations and multi-gene patterns

• Strain typing and spoligotyping

• Global TB genome comparison for outbreak tracking

• Compatible with short and long reads, whole genome or targeted panels

• Supports DNA and RNA-based inputs

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Contact Us to Learn More

USED BY RESEARCHERS AT

GeoSeeq dashboard example

Discover
GeoSeeq

100

+

Countries

100

+

Organizations

250,000

+

Data samples

Seamless Collaboration – Share projects, control access levels, and work with partners across research, biosecurity, and industry

Streamlined Data Management – Securely store, organize, and version-control large sequencing datasets with intuitive metadata tracking

Interactive Visualizations – Generate maps, dashboards, and phylogenetic trees to explore your data in real time

Integrated Bioinformatics Tools – Run powerful pipelines, from pathogen detection to variant analysis, without the need for complex infrastructure

Create Custom Maps

Make custom maps that show phylogenetics, climate, and socioeceonomic data. Choose from a library of existing datasets or bring your own. See geospatial results at a glance.

Build Interactive Plots

Keep your stakeholders and collaborators in the loop with dashboards and cloud based storage. Share results and raw data, keep metadata organized. No more searching for archived documentation on past projects.

Streamline Bioinformatics

Use advanced AI tools for predictive modeling and bioinformatics. Automatically report on quality control, taxonomy, genome assembly, and antimicrobial resistance. Build custom geospatial predictive models with ease.

Need Sequencing?

We can help with that.

From extraction to data we have you covered. Options for long and short reads available. Contact us.

Pricing

Commercial
academic*
Starter
Free
Share data, map outbreaks, analyze data.
Schedule A Demo
Team
$2500
/ year
$500
/ year
$500
/ year
Give your team the tools they need to scale.
Schedule a demo
2 months free
usage
Upload, download, and organize data
Search GeoSeeq and use public data
Share data with colleagues
Projects
Unlimited public + 2 private
Unlimited public + Unlimited private
Dashboards
1 dashboard + 2 tiles / project
Unlimited Dashboards + Unlimited Tiles
Organization Users
Up to Three
Up to 10
Guest users
Data storage
50GB
1TB + $10 / 1TB / month
BIOTIA-DX Credits*
50 credits + $0.5 per additional credit
350 credits / year + $0.5 per additional credit  
BIOTIA-DX Credits**
50 credits + $1 per additional credit
1000 credits / year + $1 per additional credit  
1000 credits / year + $0.5 per additional credit  

*Contact us for Academic Pricing
**Pipeline pricing available on GeoSeeq

Ready to Try?

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